A Powerful Distributed Cyberinfrastructure to Support
Data-Intensive Scientific Research and Collaboration

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1. JOURNAL ARTICLES
2. BOOKS, THESES AND REPORTS
3. NSF REPORTS

JOURNAL ARTICLES

Leigh, J., L. Renambot, A. Johnson, R. Jagodic, H. Hur, E. Hofer, D. Lee, “Scalable Adaptive Graphics middleware for visualization streaming and collaboration in ultra resolution display environments,” Proceedings of the Workshop on Ultrascale Visualization, 2008, UltraVis 2008, Austin, TX, November 2008

Smarr, Larry, “The OptIPuter and Its Applications,” 2009 IEEE LEOS Summer Topicals Meeting on Future Global Networks, July 22, 2009, pp. 151-152, doi: 10.1109/LEOSST.2009.5226201

Pieper, G., T.A. DeFanti, Q. Liu, M. Katz, P. Papadopoulos, J. Keefe, G. Hidley, G. Dawe, I. Kaufman, B. Glogowski, K. Doerr, J.P. Schulze, F. Kuester, P. Otto, R. Rao, L. Smarr, J. Leigh, L. Renambot, A. Verlo, L. Long, M. Brown, D. Sandin, V. Vishwanath, R. Kooima, J. Girado, B. Jeong, “Visualizing Science: The OptIPuter Project,” SciDAC Review, Issue 12, Spring 2009, IOP Publishing in association with Argonne National Laboratory, for the US Department of Energy, Office of Science, pp. 32-41.

Andrew A. Chien, Nut Taesombut, “Integrated resource management for lambda-grids: The Distributed Virtual Computer (DVC),” Future Generation Computer Systems, Volume 25, Issue 2, February 2009, pp. 147-152.

Thomas A. DeFanti, Gregory Dawe, Daniel J. Sandin, Jurgen P. Schulze, Peter Otto, Javier Girado, Falko Kuester, Larry Smarr, Ramesh Rao, “The StarCAVE, a third-generation CAVE and virtual reality OptIPortal,” Future Generation Computer Systems, Volume 25, Issue 2, February 2009, pp. 169-178.

Freek Dijkstra, Jeroen van der Ham, Paola Grosso, Cees de Laat, “A path finding implementation for multi-layer networks,” Future Generation Computer Systems, Volume 25, Issue 2, February 2009, pp. 142-146.

Leon Gommans, Li Xu, Yuri Demchenko, Alfred Wan, Mihai Cristea, Robert Meijer, Cees de Laat, “Multi-domain lightpath authorization, using tokens,” Future Generation Computer Systems, Volume 25, Issue 2, February 2009, pp. 153-160.

Robert L. Grossman, Yunhong Gu, Michael Sabala, Wanzhi Zhang, “Compute and storage clouds using wide area high performance networks,” Future Generation Computer Systems, Volume 25, Issue 2, February 2009, pp. 179-183.

Paola Grosso, Damien Marchal, Jason Maassen, Eric Bernier, Li Xu, Cees de Laat, “Dynamic photonic lightpaths in the StarPlane network,” Future Generation Computer Systems, Volume 25, Issue 2, February 2009, pp. 132-136.

Joe Mambretti, “OptIPuter: Enabling advanced applications with novel optical control planes and backplanes,” Future Generation Computer Systems, Volume 25, Issue 2, February 2009, pp. 137-141.

Luc Renambot, Byungil Jeong, Hyejung Hur, Andrew Johnson, Jason Leigh, “Enabling high resolution collaborative visualization in display rich virtual organizations,” Future Generation Computer Systems, Volume 25, Issue 2, February 2009, pp. 161-168.

Daisuke Shirai, Tetsuo Kawano, Tatsuya Fujii, Kunitake Kaneko, Naohisa Ohta, Sadayasu Ono, Sachine Arai, Terukazu Ogoshi, “Real time switching and streaming transmission of uncompressed 4K motion pictures,” Future Generation Computer Systems, Volume 25, Issue 2, February 2009, pp. 192-197.

Larry Smarr, Maxine Brown, Cees de Laat, “Special section: OptIPlanet – The OptIPuter global collaboratory,” Future Generation Computer Systems, Volume 25, Issue 2, February 2009, pp. 109-113.

Larry Smarr, Paul Gilna, Phil Papadopoulos, Thomas A. DeFanti, Greg Hidley, John Wooley, E. Virginia Armbrust, Forest Rohwer, Eric Frost, “Building an OptIPlanet collaboratory to support microbial metagenomics,” Future Generation Computer Systems, Volume 25, Issue 2, February 2009, pp. 124-131.

Venkatram Vishwanath, Robert Burns, Jason Leigh, Michael Seablom, “Accelerating tropical cyclone analysis using LambdaRAM, a distributed data cache over wide-area ultra-fast networks,” Future Generation Computer Systems, Volume 25, Issue 2, February 2009, pp. 184-191.

Thomas A. DeFanti, Jason Leigh, Luc Renambot, Byungil Jeong, Alan Verlo, Lance Long, Maxine Brown, Daniel J. Sandin, Venkatram Vishwanath, Qian Liu, Mason J. Katz, Philip Papadopoulos, Joseph P. Keefe, Gregory R. Hidley, Gregory L. Dawe, Ian Kaufman, Bryan Glogowski, Kai-Uwe Doerr, Rajvikram Singh, Javier Girado, Jurgen P. Schulze, Falko Kuester, Larry Smarr, “The OptIPortal, a scalable visualization, storage, and computing interface device for the OptiPuter,” Future Generation Computer Systems, Volume 25, Issue 2, February 2009, pp. 114-123.

V. Vishwanath, J. Leigh, T. Shimizu, S. Nam, L. Renambot, H. Takahashi, M. Takizawa, O. Kamatani, “The Rails Toolkit (RTK) - Enabling End-System Topology-Aware High End Computing,” The 4th IEEE International Conference on e-Science, December 7-12, 2008.

V. Vishwanath, L. Zuck, “Verification of Data Intensive High Performance Computing Middleware,” Exploiting Concurrency Efficiently & Correctly (EC)2 Workshop, 20th International Conference on Computer Aided Verification, Princeton, NJ, July 7-8, 2008.

V. Vishwanath, L. Zuck, J. Leigh, “Specification and Verification of LambdaRAM – A Wide-Area Distributed Cache for High Performance Computing,” Sixth ACM-IEEE International Conference on Formal Methods and Models for Codesign (MEMOCODE 2008), Anaheim, CA, June 5-7, 2008

Jason Leigh and Maxine D. Brown, “Cyber-commons: merging real and virtual worlds,” Communications of the ACM, Volume 51, Issue 1, January 2008, pp. 82-85

D. Newman, A. Asuncion, P. Smyth, and M. Welling, "Distributed inference for latent Dirichlet allocation," Advances in Neural Information Processing Systems, Volume 20, December 2007, to appear.

H. Xia and A.A. Chien, "RobuSTore: A Distributed Storage Architecture with Robust and High Performance," Proceedings of ACM/IEEE International Conference on High Performance Computing and Communications (SC’07), November 2007

Nut Taesombut and A.A. Chien, "Evaluating Network Information Models on Resource Efficiency and Application Performance in Lambda-Grids," Proceedings of ACM/IEEE International Conference on High Performance Computing and Communications (SC’07), November 2007

Y. Tsukishima, A. Hirano, N. Nagatsu, W. Imajuku, M. Jinno, Y. Hibino, Y. Takigawa, K. Hagimoto, X. Wang, L. Renambot, B. Jeong, J. Leigh, T. DeFanti, A. Verlo, "Lambda Sharing Demonstration via Traffic-Driven Lambda-on-Demand," Proceedings of the 33rd European Conference and Exhibition on Optical Communication (ECOC 2007), International Congress Center (ICC), Berlin, Germany, September 16-20, 2007.

J. Leigh, A. Johnson, L. Renambot, D. Sandin, T. DeFanti, M. Brown, B. Jeong, R. Jagodic, C. Krumbholz, D. Svistula, H. Hur, R. Kooima, T. Peterka, J. Ge, C. Falk, "Emerging from the CAVE: Collaboration in Ultra High Resolution Environments," Proceedings of the First International Symposium on Universal Communication, Kyoto, Japan, June 14-15, 2007.

E. Weigle and A.A. Chien, "Partial Content Distribution on High Performance Networks," Proceedings of IEEE International Symposium on High Performance Distributed Computing (HPDC ‘07), June 2007

D. Kilb, V.G. Martynov, F.L. Vernon, "Aftershock Detection Thresholds as a Function of Time: Results from the ANZA Seismic Network following the 31 October 2001 ML 5.1 Anza, California, Earthquake," Bulletin of the Seismological Society of America, Vol. 97, No. 3, June 2007, pp 780–792.

D. Gunter, K. Huck, K. Karavanic, J. May, A. Malony, K. Mohror, S. Moore, A. Morris, S. Shende, V. Taylor, X. Wu, Y. Zhang, "Performance Database Technology for SciDAC Applications," Proceedings of Scientific Discovery through Advanced Computing Conference (SciDAC 2007), Journal of Physics: Conference Series, Vol. 78, June 2007.

Nut Taesombut and A.A. Chien, "Evaluating the Impacts of Network Information Models on Applications and Network Service Providers," Proceedings of IEEE International Symposium on High Performance Distributed Computing (HPDC ‘07), June 2007

Y. Zhang, F. Fowler, K. Huck, A. Malony, A. Porterfield, D. Reed, S. Shende, V. Taylor, X. Wu, "USQCD Computational Performance Studies with PERI," Proceedings of Scientific Discovery through Advanced Computing Conference (SciDAC 2007), Journal of Physics: Conference Series, Vol. 78, June 2007.

Y. Zuo, X. Wu, V. Taylor, "Performance Analysis and Optimization of the Regional Ocean Model System on TeraGrid," Proceedings of TeraGrid ‘07 Conference, University of Wisconsin at Madison, June 2007.

L. Friedman, H. Stern, G.G. Brown, D.H. Mathalon, J. Turner, G.H. Glover, R.L. Gollub, J. Lauriello, K.O. Lim, T. Cannon, D.N. Greve, H.J. Bockholt, A. Belger, B. Mueller, M.J. Doty, J. He, W. Wells, P. Smyth, S. Pieper, S. Kim, M. Kubicki, M. Vangel, S.G. Potkin, "Test-retest and between-site reliability in a multicenter fMRI study," Human Brain Mapping, in press.

L. Renambot, B. Jeong, J. Leigh, “Real-Time Compression For High-Resolution Content,” Proceedings of the Access Grid Retreat 2007, Chicago, IL, May 14-16, 2007.

Huan Xu, Oliver Yu, Leping Yin, Ming Liao, "Robust Fast Optical Reservation Protocol for Realtime Lightpath Restoration and Establishment," High-Speed Networking Workshop: The Terabit Challenge, IEEE INFOCOM 2007, Anchorage, Alaska, May 8-11, 2007.

V. Vishwanath, T. Shimizu, M. Takizawa, K. Obana, J. Leigh, "Towards Terabit/s Systems: Performance Evaluation of Multi-Rail Systems," High-Speed Networking Workshop: The Terabit Challenge, IEEE INFOCOM 2007, Anchorage, Alaska, May 8-11, 2007

L. Smarr, L. Herr, T. DeFanti, N. Ohta, P. Otto, "CineGrid: A New Cyberinfrastructure for High Resolution Media Streaming," Cyberinfrastructure Technology Watch Quarterly, Vol. 3, No. 2, May 2007

T. Moher, J. Wiley, "Classroom Space, Classroom Time, and the Representation of Dynamic Phenomena," Annual Conference of the American Educational Research Association, April 9-13, 2007, Chicago, IL

K.H. Kim and S.F. Jenks, "The TMO Scheme for Wide-area Distributed Real-Time Computing and Distributed Time-triggered Simulation," Proceedings of NSF Next Generation Software Workshop held in conjunction with the International Parallel and Distributed Processing Symposium, March 2007.

R. Seshadri, S.A. Kravitz, L. Smarr , P. Gilna M. Frazier, "A Community Resource for Metagenomics: CAMERA" PLoS Biol, Vol. 5, No. 3, March 2007, pp. e75

A.M. Jacobs, D. Kilb and G. Kent, "3-D Interdisciplinary Visualization: Tools for Scientific Analysis and Communication," Geochemistry, Geophysics, Geosystems (G-cubed), in review, 2007.

L. Smarr, "Riding the Light Towards New Science" Nature Photonics, Vol. 1, No. 3, 2007, pp. 133-135

Robert L. Grossman, Joe Mambretti, Yunhong Gu, "A Peer-to-Peer Infrastructure for Distributing Large Scientific Data Sets Over Wide Area High-Performance Networks: Experimental Studies Using Wide Area Layer 2 Services," Proceedings of GridNets 07, Lyon, France.

S.J. Camargo, A.W. Robertson, S.J. Gaffney, P. Smyth, M. Ghil, "Cluster analysis of typhoon tracks. Part I: General properties," Journal of Climate, Volume 20, 2007, pp. 3635-3653.

S.J. Camargo, A.W. Robertson, S.J. Gaffney, P. Smyth, M. Ghil, "Cluster analysis of typhoon tracks. Part II: Large-scale circulation and ENSO," Journal of Climate, Volume 20, 2007, pp. 3654-3676.

S.J. Gaffney, A.W. Robertson, P. Smyth, S.J. Camargo, M. Ghil, "Probabilistic clustering of extratropical cyclones using regression mixture models," Climate Dynamics, Vol. 29, No. 4, 2007, pp. 423-440.

Steve Thorpe, Joe Mambretti, et. al., "G-lambda and EnLIGHTened: Wrapped In Middleware Co-allocating Compute and Network Resources Across Japan and the US," Proceedings GridNets 07, Lyon, France.

V. Vishwanath, T. Shimizu, M. Takizawa, K. Obana, J. Leigh, "Towards Terabit/s Systems: Performance Evaluation of Multi-Rail Systems" (poster), Proceedings of Supercomputing 2007 (SC07), Reno, NV, Nov 10-16, 2007

E.C. Hofer, "Experiences using uncompressed HD conferencing," 6th Annual Workshop on Advanced Collaborative Environments, December 12-13, 2006, Geneva, Switzerland.

S. Kim, P. Smyth, H. Stern, "A nonparametric Bayesian approach to detecting spatial activation patterns in fMRI data," Proceedings of the 9th International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), Springer-Verlag, to appear, 2006.

Chaitanya Chemudugunta, Padhraic Smyth, Mark Steyvers, "Modeling General and Specific Aspects of Documents with a Probabilistic Topic Model," Advances in Neural Information Processing Systems, Volume 19, December 2006, pp. 241-248.

A. Ihler, P. Smyth, "Learning time-intensity profiles of human activity using non-parametric Bayesian models," Advances in Neural Information Processing Systems, Volume 19, December 2006, pp. 625-632.

Seyoung Kim, Padhraic Smyth, "Hierarchical Dirichlet Processes with Random Effects," Advances in Neural Information Processing Systems, Volume 19, December 2006, pp. 697-704.

Joseph Touch, Yi-hua Yang, "Reducing the Impact of DoS Attacks on Endpoint IP Security," NPSec Workshop, 14th IEEE International Conference on Network Protocols (ICNP 2006), Santa Barbara, CA, November 12 - 15, 2006, pp. 6-11

B. Jeong, L. Renambot, R. Jagodic, R. Singh, J. Aguilera, A. Johnson, J. Leigh, "High-Performance Dynamic Graphics Streaming for Scalable Adaptive Graphics Environment," SC 2006, Tampa, Florida, November 11-17, 2006.

O. Yu, L. Yin, H. Xu, M. Liao, "Multi-Granular Integrated Services Optical Network," Journal of Optical Networking, Optical Society of America, Volume 5, Issue 12, November 2006, pp. 985-1001

Y. Cao, O. Yu, "Groupcast in Wavelength-Routed WDM Networks," IEEE Journal of Lightwave Technology, Vol. 24, No. 11, November 2006, pp. 4286-4295.

X. Wang, V. Vishwanath, B. Jeong, R. Jagodic, E. He, L. Renambot, A. Johnson, J. Leigh, "LambdaBridge: A Scalable Architecture for Future Generation Terabit Applications," Broadnets 2006: Third International Conference on Broadband Communications, Networks, and Systems, San Jose, CA, October 1-5, 2006.

E. He, X. Wang, J. Leigh, "A Flexible Advance Reservation Model for Multi-Domain WDM Optical Networks," IEEE Communications Society, GridNets 2006, San Jose, CA, October 1-2, 2006.

Robert L. Grossman, Yunhong Gu, David Handley, Michal Sabala, Joe Mambretti, Alex Szalay, Ani Thakar, Kazumi Kumazoe, Oie Yuji, Minsun Lee, Yoonjoo Kwon, and Woojin Seok, "Data Mining Middleware for Wide Area High Performance Networks," Future Generation Computer Systems, Volume 22, Issue 8, Elsevier, October 2006, pp. 940-948.

Jason Leigh, Luc Renambot, Andrew Johnson, Byungil Jeong, Ratko Jagodic, Nicholas Schwarz, Dmitry Svistula, Rajvikram Singh, Julieta Aguilera, Xi Wang, Venkatram Vishwanath, Brenda Lopez, Daniel J Sandin, Tom Peterka, Javier Girado, Robert Kooima, Jinghua Ge, Lance Long, Alan Verlo, Thomas A DeFanti, Maxine Brown, Donna Cox, Robert Patterson, Patrick Dorn, Paul Wefel, Stuart Levy, Jonas Talandis, Joe Reitzer, Tom Prudhomme, Tom Coffin, Brian Davis, Paul Wielinga, Bram Stolk, Gee Bum Koo, Jae Youn Kim, Sang Woo Han, Jong Won Kim, Brian Corrie, Todd Zimmerman, Pierre Boulanger, Manuel Garcia, "The Global Lambda Visualization Facility: An International Ultra-High-Definition Wide-Area Visualization Collaboratory," Future Generation Computer Systems, Volume 22, Issue 8, Elsevier, October 2006, pp. 964-971.

Joe Mambretti, Rachel Gold, Fei Yeh, Jim Chen, "AMROEBA: Computational Astrophysics Modeling Enabled by Dynamic Lambda Switching ," Future Generation Computer Systems, Volume 22, Issue 8, Elsevier, October 2006, pp. 949-954.

Tom Peterka, Daniel J. Sandin, Jinghua Ge, Javier Girado, Robert Kooima, Jason Leigh, Andrew Johnson, Marcus Thiebaux and Thomas A. DeFanti, "Personal Varrier: Autostereoscopic virtual reality display for distributed scientific visualization ," Future Generation Computer Systems, Volume 22, Issue 8, Elsevier, October 2006, pp. 976-983.

Takashi Shimizu, Daisuke Shirai, Hirokazu Takahashi, Takahiro Murooka, Kazuaki Obana, Yoshihide Tonomura, Takeru Inoue, Takahiro Yamaguchi, Tetsuro Fujii, Naohisa Ohta, Sadayasu Ono, Tomonori Aoyama, Laurin Herr, Natalie van Osdol, Xi Wang, Maxine Brown, Tom DeFanti, Rollin Feld, Jacob Balser, Steve Morris, Trevor Henthorn. Greg Dawe, Peter Otto, Larry Smarr, "International Real-Time Streaming of 4K Digital Cinema ," Future Generation Computer Systems, Volume 22, Issue 8, Elsevier, October 2006, pp. 929-939.

Rajvikram Singh, Nicholas Schwarz, Nut Taesombut, David Lee, Byungil Jeong, Luc Renambot, Abel W. Lin, Ruth West, Hiromu Otsuka, Sei Naito, Steven T. Peltier, Maryann E. Martone, Kazunori Nozaki, Jason Leigh and Mark H. Ellisman, "Real-time multi-scale brain data acquisition, assembly, and analysis using an end-to-end OptIPuter ," Future Generation Computer Systems, Volume 22, Issue 8, Elsevier, October 2006, pp. 1032-1039.

Larry Smarr, Maxine Brown, Tom DeFanti and Cees de Laat (guest editors), Special section on iGrid 2005: The Global Lambda Integrated Facility , Future Generation Computer Systems, Volume 22, Issue 8, Elsevier, October 2006, pp. 849-1054.

Larry Smarr, Thomas A. DeFanti, Maxine D. Brown and Cees de Laat, “iGrid 2005: The Global Lambda Integrated Facility” (editorial), Future Generation Computer Systems, Volume 22, Issue 8, Elsevier, October 2006, pp. 849-851.

Bram Stolk and Paul Wielinga, "Building a 100 Mpixel graphics device for the OptIPuter ," Future Generation Computer Systems, Volume 22, Issue 8, Elsevier, October 2006, pp. 972-975.

Nut Taesombut, Xinran (Ryan) Wu, Andrew A. Chien, Atul Nayak, Bridget Smith, Debi Kilb, Thomas Im, Dane Samilo, Graham Kent and John Orcutt, "Collaborative data visualization for Earth Sciences with the OptIPuter ," Future Generation Computer Systems, Volume 22, Issue 8, Elsevier, October 2006, pp 955-963.

Oliver Yu, Anfei Li, Yuan Cao, Leping Yin, Ming Liao and Huan Xu, "Multi-domain Lambda Grid data portal for collaborative Grid applications ," Future Generation Computer Systems, Volume 22, Issue 8, Elsevier, October 2006, pp. 993-1003.

Eric Weigle, Matti Hiltunen, Rick Schlicting, Vinay A. Vaishampayan and Andrew Chien, "Peer-to-Peer Error Recovery for Hybrid Satellite-Terrestrial Networks ," Proceedings of the 6th IEEE International Conference on Peer-to-Peer Computing (P2P2006), Cambridge, UK, September 6-8, 2006.

Norihito Fujita, Joseph D. Touch, Venkata Pingali, Yu-Shun Wang, "A Dynamic Topology and Routing Management Strategy for Virtual IP Networks," IEICE Transactions on Communications, Vol. E89-B, No. 9, September 2006.

Y. Cao, O. Yu, "Optimization of Loss-balanced Multicast in All-Optical WDM Networks," Springer Journal of Combinatorial Optimization, Vol. 12, No. 1-2, September 2006, pp. 71-82.

Xingfu Wu, Valerie Taylor, Joseph Paris, "A Web-based Prophesy Automated Performance Modeling System ," IASTED International Conference on Web Technologies, Applications and Services (WTAS2006), July 17-19, 2006, Calgary, Canada.

Maxine Brown, Larry Smarr, Tom DeFanti, Jason Leigh, Mark Ellisman, Phil Papadopoulos, "The OptIPuter: A National and Global-Scale Cyberinfrastructure for Enabling LambdaGrid Computing," TeraGrid '06 Conference, June 12-15, 2006. [Abstract] [PPTs]

Eric He, Xi Wang, Venkat Vishwanath, Jason Leigh, "AR-PIN/PDC: Flexible Advance Reservation of Intradomain and Interdomain Lightpaths," IEEE GlobeCom 2006, July 2006.

Debi Kilb and Jeanne L. Hardebeck, "Fault Parameter Constraints Using Relocated Earthquakes: A Validation of First-Motion Focal-Mechanism Data," Bulletin of the Seismological Society of America, Vol. 96, No. 3, June 2006, pp. 1140–1158.

M. Thompson and Tom Moher, "HelioRoom: Problem-solving in a whole class visual simulation ," Proceedings International Conference of the Learning Sciences (ICLS 2006), June 2006, Bloomington, IN, 2006, pp. 1000-1001.

Chetan Gupta, Robert Grossman, "Multiscale Analysis of Data: Clusters, Outliers, and Noise - Preliminary Results," Second NASA Data Mining Workshop: Issues and Applications in Earth Sciences, May 22-24, 2006.

Robert E. McGrath, Emily Wu, Doru Marcusiu, Andrew Shirk, "D2K Web Service Deployment: Resource Usage Accounting ," NCSA Technical Report, Revised May 18, 2006.

Huaxia Xia and Andrew Chien, "RobuSTore: Robust Performance for Distributed Storage Systems," 14th NASA Goddard -- 23nd IEEE Conference on Mass Storage Systems and Technologies (MSST2006), College Park, MD, May 15-18, 2006. (Extended version available as UCSD Technical Report CS2006-0851.)

V. Vishwanath, W. Feng, M. Gardner and J. Leigh, "A High-Performance Sensor for Cluster Monitoring and Adaptation," Technical Report – EVL Research Gear ID: Vishwanath 20060505.

Joe Mambretti, "Infrastructure as Platform: Services-Oriented Architecture, Visualization, and 21st Century Communications ," Reprinted from IEC Annual Review of Communications 2006, “Analysts Corner” IEC Newsletter, May 2006.

N. Taesombut, F. Uyeda, A.A. Chien, T.A. DeFanti, P. Papadopoulos, J. Leigh, M. Ellisman, and J. Orcutt, "The OptIPuter: High-Performance, QoS-Guaranteed Network Service for Emerging E-Science Applications ," IEEE Communication Magazine, Vol 44. No. 5, May 2006, pp. 38-45.

V. Vishwanath, J. Leigh, E. He, M.D. Brown, L. Long, L. Renambot, A. Verlo, X. Wang, T.A. DeFanti, "Wide-Area experiments with LambdaStream over dedicated high-bandwidth networks ," IEEE INFOCOM High-Speed Networking Workshop: The Terabit Challenge 2006, Barcelona, SPAIN, April 24-26, 2006.

M. Barron, T. Moher, and J. Maharry, "RoomBugs: Simulating Insect Infestations in Elementary Classrooms using Commodity Hardware," ACM Conference on Human Factors in Computing Systems (CHI 2006) Extended Abstracts on Human Factors in Computing Systems, Montreal, Canada, April 2006, pp. 315-320.

T. Moher, "Embedded Phenomena: Supporting Science Learning with Classroom-sized Distributed Simulations," Proceedings ACM Conference on Human Factors in Computing Systems (CHI 2006), Montreal, Canada), April 2006, pp. 691-700. (Best Paper award)

T. Moher, S. Hussain, M. Barron, M. Thompson, "RoomQuake: Learning, Self-Concept, and Growth of a Community of Practice in a Persistent Whole-Classroom Simulation ," Annual Conference of the American Education Research Association, San Francisco, CA, April 2006.

T. Moher, Y. Rogers, C. Quintana, R. Joiner, "Co-Present Distributed Simulations of Science Phenomena for K-8 Learners: A Technology Designers' Round-Robin Symposium," Annual Conference of the American Education Research Association, April 2006, San Francisco, CA.

L. Renambot, B. Jeong, R. Jagodic, A. Johnson, J. Leigh, J. Aguilera, "Collaborative Visualization using High-Resolution Tiled Displays," ACM Conference on Human Factors in Computing Systems (CHI 2006), Montreal, Canada), April 2006.

Alimohideen, J., L. Renambot, J. Leigh, A. Johnson, R. Grossman, M. Sabala, M., “PAVIS - Pervasive Adaptive Visualization and Interaction Service,” CHI 06 Workshop on Information Visualization and Interaction Techniques for Collaboration Across Multiple Displays, Montreal, Canada, April 2006

Robert E. McGrath, Emily Wu, Doru Marcusiu, Andrew Shirk, Terry Fleury, Von Welch, "D2K Web Service Deployment: Security Review ," NCSA Technical Report, March 8, 2006.

Yukio Tsukishima, Akira Hirano, Naohide Nagatsu, Takuya Ohara, Wataru Imajuku, Masahiko Jinno, Yoshihiro Takigawa, Kazuo Hagimoto, Luc Renambot, Byungil Jeong, Jason Leigh, Tom DeFanti, Alan Verlo, Linda Winkler, "The First Application-Driven Lambda-on-Demand Field Trial over a US Nationwide Network ," Proceedings of OFC/NFOEC 2006 (Optical Fiber Communication/ National Fiber Optic Engineers Conference), sponsored by IEEE/ComSoc, IEEE/LEOS and the Optical Society of America (OSA), Anaheim, CA, paper PDP48, March 5-10, 2006.

J. Mambretti, David Lillethun, John Lange, Jeremy Weinberger, "Optical Dynamic Intelligent Network Services (ODIN): An Experimental Control Plane Architecture for High-Performance Distributed Environments Based on Dynamic Lightpath Provisioning," IEEE Communications Magazine, Special Issue on An Optical Control Plane for the Grid Community, Vol. 44, No. 3, March 2006, pp. 92-99.

J. Turner, P. Smyth, F. Macciardi, J.H. Fallon, J. Kennedy, S. Potkin, "Imaging phenotypes and genotypes in schizophrenia," Neuroinformatics, Vol. 4, No. 1, March 2006, pp. 21-50.

Robert E. McGrath, Emily Wu, Andrew Shirk, Doru Marcusiu, "D2K Web Service Testbed Report ," NCSA Technical Report, February 17, 2006.

Robert E. McGrath, Emily Wu, Andrew Shirk, "D2K Web Service Deployment: Report on Testbed Experiments ," NCSA Technical Report, February 14, 2006.

V. Vishwanath, P. Balaji, W. Feng, J. Leigh, D.K. Panda, "A Case for UDP Offload Engines in LambdaGrids ," Proceedings of The Fourth International Workshop on Protocols for Fast Long-Distance Networks (PFLDnet 2006), Nara, Japan, February 2-3, 2006.

Xinran Wu and Andrew Chien, "Evaluation of End-node Based Protocols for Lambda Networks ," Proceedings of the Fourth International Workshop on Protocols for Fast Long-Distance Networks (PFLDNet2006), Nara, Japan, Feb 2-3, 2006.

O. Yu, Y. Cao, "Placement of Light Splitters and Wavelength Converters for Efficient Multicast in All-Optical WDM Networks," IEICE Transactions on Information and Systems, Vol. E89-D, No. 2, February 2006, pp. 709-718.

V. Vishwanath, R. Burns, J. Leigh, "LambdaRAM feasibility report for NASA Goddard Weather Modeling and Prediction Applications," NASA Technical Report, 2006.

V. Vishwanath, R. Burns, J. Leigh, “LambdaRAM prototype report for NASA Goddard Weather Modeling and Prediction Applications,” NASA Technical Report, 2006.

M.T. Goodrich, D.S. Hirschberg, "Efficient Parallel Algorithms for Dead Sensor Diagnosis and Multiple Access Channels," 18th ACM Symposium on Parallelism in Algorithms and Architectures (SPAA), 2006.

M.T. Goodrich, M. Sirivianos, J. Solis, G. Tsudik, E. Uzun, "Loud And Clear: Human-Verifiable Authentication Based on Audio," 26th IEEE International Conference on Distributed Computing Systems (ICDCS), 2006.

M.T. Goodrich, M.J. Nelson, J.Z. Sun, "The Rainbow Skip Graph: A Fault-Tolerant Constant-Degree Distributed Data Structure," 16th ACM-SIAM Symposium on Discrete Algorithms (SODA), 2006, pp. 384-393.

M.T. Goodrich, R. Tamassia, D. Yao, "Notarized Federated Identity Management for Web Services," 20th IFIP WG Working Conference on Data and Application Security (DBSec), 2006.

X. Wu, V. Taylor, et. al., "Performance Analysis, Modeling and Prediction of a Parallel Multiblock Lattice Boltzmann Application using Prophesy System," Proceedings of the IEEE International Conference on Cluster Computing (Cluster 2006), 2006

Renambot, L., Jeong, B., Jagodic, R., Johnson, A., Leigh, J., Aguilera, J., “Collaborative Visualization using High-Resolution Tiled Displays,” CHI 06 Workshop on Information Visualization and Interaction Techniques for Collaboration Across Multiple Displays, 2006

L. Arge, D. Eppstein, M.T. Goodrich, "Skip-Webs: Efficient Distributed Data Structures for Multi-Dimensional Data Sets," 24th ACM Symposium on Principles of Distributed Computing (PODC), 2005.

M.J. Atallah, M.T. Goodrich, R. Tamassia, "Indexing Information for Data Forensics," 3rd Applied Cryptography and Network Security Conference (ACNS), Lecture Notes in Computer Science 3531, Springer, 2005, pp. 206-221.

Donna Cox, et. al., "Visualization of an F3 Tornado within a Supercell Thunderstorm Simulation" (animation – 1 minute: 15 seconds), SIGGRAPH Video Review, ACM SIGGRAPH, Issue 150, Number 16, 2005, DVD.

W. Du, M.T. Goodrich, "Searching for High-Value Rare Events with Uncheatable Grid Computing," 3rd Applied Cryptography and Network Security Conference (ACNS), Lecture Notes in Computer Science 3531, Springer, 2005, pp. 122-137.

S. Gaffney, A.W. Robertson, P. Smyth, S. Camargo, M. Ghil, "Probabilistic Clustering of Extra-Tropical Cyclones using Regression Mixture Models," Monthly Weather Review, submitted, 2005.

M.T. Goodrich, "Leap-Frog Packet Linking and Diverse Key Distributions for Improved Integrity in Network Broadcasts," Proceedings of IEEE Symposium on Security and Privacy (SSP), 2005, pp. 196-207.

Robert L. Grossman, Yunhong Gu, Dave Hanley, Xinwei Hong and Babu Krishnaswamy, "Experimental Studies of Data Transport and Data Access of Earth Science Data over Networks with High Bandwidth Delay Products," 2005, (submitted for publication).

A. Ihler, S. Kirshner, P. Smyth, M. Ghil, A. Robertson, "Graphical Models for Statistical Inference and Data Assimilation," Physica D, submitted 2005.

G.M. Kent, J.M. Babcock, N.W. Driscoll, A.J. Harding, J.A. Dingler, G.G. Seitz, J.V. Gardner, L.A. Mayer, C.R. Goldman, A.C. Heyvaert, R.C. Richards, R. Karlin, C.W. Morgan, P.T. Gayes, L.A. Owen, "60 k.y. Record of Extension across the Western Boundary of the Basin and Range Province: Estimate of Slip Rates from Offset Shoreline Terraces and a Catastrophic Slide Beneath Lake Tahoe," Geology, Vol. 33, 2005, pp. 365-368. 

S. Kim, P. Smyth, H. Stern, J. Turner, "Parametric response surface models for analysis of multi-site fMRI data," Proceedings of the 8th International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), Palm Springs, CA Springer-Verlag, Part I, Vol. 3749 of Lecture Notes in Computer Science, 2005, pp. 352-359.

A.W. Robertson, S. Kirshner, P. Smyth, S.P. Charles, B. Bates, "Subseasonal-to-Interdecadal Variability of the Australian Monsoon over North Queensland," Q.J.R. Meteorological Society, submitted 2005.

Yunhong Gu, Robert Grossman, "Supporting Configurable Congestion Control in Data Transport Services," ACM/IEEE SC 2005 Conference, Seattle, WA, November 12-18, 2005.

L. Renambot, J. Leigh, V. Vishwanath, D. Lee, A. Nayak, N. Schwarz, L. Long, A. Verlo, R. Singh, and F. Dijkstra, "Interactive Remote Visualization of Large High-Resolution Time-Varying Geophysical and Biological Datasets," Proceedings of the IEEE/ACM Supercomputing Conference 2005 (SC2005), November 12-18, 2005.

T. Lavian, D. Hoang, J. Mambretti, S. Figueira, S. Naiksatam, N. Kaushil, I. Monga, R. Durairaj, D. Cutrell, S. Merrill, H. Cohen, P. Daspit, F. Travostino, "A Platform for Large-Scale Grid Data Service on Dynamic High-Performance Networks," 2nd International Workshop on Grid Network Research (GridNets 2005), Boston, MA, October 6-7, 2005.

Joe Mambretti, Jim Chen, Fei Yeh, "Distributed Optical Testbed (DOT): A Grid Applications and Optical Communications Testbed", GridNets 2005 (Second International Workshop on Networks for Grid Applications), Boston, MA, October 6-7, 2005.

Krumbholz, C., J. Leigh, A. Johnson, L. Renambot, R. Kooima, “LambdaTable: High Resolution Tiled Display Table for Interacting with Large Visualizations,” Workshop for Advanced Collaborative Environments (WACE) 2005, Redmond, Washington, September 2005

J. Mambretti, "Ultra Performance Dynamic Optical Networks and Control Planes for Next Generation Applications," Proceedings of the Mini-Symposium on Optical Data Networking, Grasmere, England, August 22-24, 2005

Donna Cox, et. al., "Visualization of an F3 Tornado within a Supercell Thunderstorm Simulation," SIGGRAPH 2005 Conference Electronic Art and Animation Catalog, ACM SIGGRAPH, August 2005, pp. 248-249.

Donna Cox, et. al., "Visualization of an F3 Tornado within a Supercell Thunderstorm Simulation," SIGGRAPH 2005 Electronic Theater Program, published by ACM SIGGRAPH in conjunction with Computer Graphics World, Number 25, pp. 10.

Luc Renambot, Andrew Johnson and Jason Leigh, "Techniques for Building Cost-Effective Ultra-high-resolution Visualization Instruments," presented at the 2005 NSF CISE/CNS Pervasive Computing Infrastructure Experience Workshop, hosted by NCSA/UIUC in Urbana-Champaign, IL, July 27, 2005.

Xingfu Wu, Valerie Taylor, Jason Leigh, and Luc Renambot, "Performance Analysis of a 3D Parallel Volume Rendering Application on Scalable Tiled Displays ," International Conference on Computer Graphics, Imaging and Vision (CGIV05), sponsored by Chinese Academy of Sciences, Beijing, China, July 26-29, 2005.

S.F. Jenks, K. Kim, E. Henrich, Y. Li, L. Zheng, M. H. Kim, H.-Y. Youn, K. H. Lee, and D.-M. Seol, "A Linux-Based Implementation of a Middleware Model Supporting Time-Triggered Message-Triggered Objects," Proceedings of 8th IEEE International Symposium on Object-oriented Real-time Distributed Computing (ISORC 2005), Seattle, WA, May 18-20, 2005, pp. 350- 358.

Atul Nayak, F. Vernon, G. Kent, J. Orcutt, D. Kilb, R. Newman, J. Eakins, L. Smarr, T. DeFanti, J. Leigh, L. Renambot, A. Johnson, "iCluster: Visualizing USArray Data on a Scalable High Resolution Tiled Display using the OptIPuter" (presentation), Geosciences Network (GEON) 3rd Annual Meeting, San Diego, CA, May 5-6, 2005.

J. Farrell, R.B. Smith, D. Kilb, E. Morikawa, "The Yellowstone GEO GIS Database: Facilitating Integrated Research and Data Distribution for Yellowstone Geoscience," GEON Meeting, San Diego, May 2005.

A. Nayak, F.L. Vernon, G.M. Kent, J. Orcutt, D. Kilb, R.L. Newman, J. Eakins, L. Smarr, T. DeFanti, J. Leigh, L. Renambot, A. Johnson, "iCluster: Visualizing USArray Data on a Scalable High Resolution Tiled Display using the OptIPuter," GEON Meeting, San Diego, May 2005.

Eric Weigle, Andrew A. Chien, "The Composite Endpoint Protocol (CEP): Scalable Endpoints for Terabit Flows ," Proceedings of the 5th IEEE/ACM International Symposium on Cluster Computing and the Grid (CCGrid 2005), May 2005.

Xinran (Ryan) Wu, Andrew A. Chien, Matti A. Hiltunen, Richard D. Schlichting and Subhabrata Sen, "A High Performance Configurable Transport Protocol for Grid Computing ," Proceedings of the 5th IEEE/ACM International Symposium on Cluster Computing and the Grid (CCGrid 2005), May 2005.

B. Jeong, R. Jagodic, L. Renambot, R. Singh, A. Johnson, J. Leigh, "Scalable Graphics Architecture for High-Resolution Displays," Proceedings of IEEE Information Visualization Workshop 2005, Minneapolis, MN, April 23-25, 2005.

A. Nayak, D. Kilb, "3D Visualization of Recent Sumatra Earthquake," EOS Transactions, American Geophysical Union, Vol. 86, No. 14, April 5, 2005, pp. 142.

D. Kilb, J. Bowen, C. Cruz, J. Eakins, K. Lindquist, V.G. Martynov, A. Nayak, R.L. Newman, J. Otero, G. Prieto and F.L. Vernon, "Near-Real Time Generation Of 3D Interactive Visualization and Web-Based Information Pertaining to the September 28, 2004 Mw 6 Parkfield Earthquake," Seismological Society of America (SSA), April 2005.

T. Moher, S. Hussain, T. Halter, D. Kilb, "Roomquake: Embedding Dynamic Phenomena within the Physical Space of an Elementary School Classroom ," ACM Conference on Human Factors in Computing Systems (CHI 2005), Portland, OR, April 2005, pp. 1665-1668.

Larry Smarr, Joe Ford, Phil Papadopoulos, Shaya Fainman, Thomas DeFanti, Maxine Brown, Jason Leigh, "The OptIPuter, Quartzite, and Starlight Projects: A Campus to Global-Scale Testbed for Optical Technologies Enabling LambdaGrid Computing," (invited paper), Optical Fiber Communication Conference & Exposition and the National Fiber Optic Engineers Conference (OFC/NFOEC) 2005, Anaheim, California, March 6-11, 2005, CD ROM.

David A. Hinds, Laura L. Stuve, Geoffrey B. Nilsen, Eran Halperin, Eleazar Eskin, Dennis G. Ballinger, Kelly A. Frazer, and David R. Cox, "Whole-Genome Patterns of Common DNA Variation in Three Human Populations," Science, Volume 307, AAAS, February 18, 2005, pp. 1072-1079.

Yunhong Gu, Robert L. Grossman, "Optimizing UDP-Based Protocol Implementations," Proceedings of the Third International Workshop on Protocols for Fast Long-Distance Networks (PFLDnet 2005), Lyons, France, February 3-4, 2005.

Chaoyue Xiong, Jason Leigh, Eric He, Venkatram Vishwanath, Tadao Murata, Luc Renambot, Thomas A. DeFanti, "LambdaStream: A Data Transport Protocol for Network-Intensive Streaming Applications over Photonic Networks," Proceedings of the Third International Workshop on Protocols for Fast Long-Distance Networks (PFLDnet 2005), Lyons, France, February 3-4, 2005.

K.H. Kim, S. Jenks, L. Smarr, A. Chien, and L.-C. Zheng, "A Framework for Middleware Supporting Real-Time Wide-Area Distributed Computing," Proceedings of Tenth IEEE International Workshop on Object-Oriented Real-Time Dependable Systems (WORDS 2005), Sedona, AZ, February 2-4, 2005, pp. 231-240.

D. Kilb, G.M. Kent, A. Nayak, "Seeing Is Believing: 3D Interactive Visualization Tools that Include the Juxtaposition Of Multivariate Data" (poster), EarthScope meeting, February 2005.

Kurt D. Schwehr, Carrie Nishimura, Catherine L. Johnson, Debi Kilb, Atul Nayak, "Visualization Tools Facilitate Geological Investigations of Mars Exploration Rover Landing Sites", IS&T/SPIE Electronic Imaging Proceedings, January 16-20, 2005.

J. Mambretti, "Recent Progress on TransLight, OptIPuter, OMNInet And Future Trends Toward Lambda Grids," Proceedings, 8th International Symposium On Contemporary Photonics Technology (CPT2005), Tokyo, Japan, January 12-14, 2005.

J. Mambretti, "Preparing Regions and Cities for the 21st Century Economy: Policies for Digital Communications Infrastructure" (white paper), MacArthur Foundation Policy Project Forum, Development Globalization and Technology: Strategies to Enhance Regional Competitiveness, Chicago, Illinois, January 2005.

Atul Nayak, F. Vernon, G. Kent, J. Orcutt, D. Kilb, R. Newman, L. Smarr, T. DeFanti, J. Leigh, L. Renambot, A. Johnson, "High Resolution Visualization of USArray Data on a 50 Megapixel Display using OptIPuter Technologies" (abstract), EOS Transactions of the American Geophysical Union (AGU), Vol. 85, No. 47, Fall Meeting, Abstract SF13A-0702, San Francisco, CA, December 13-17, 2004.

Atul Nayak, Frank Vernon,Graham Kent, John Orcutt, Debi Kilb, Rob Newman, Larry Smarr, Tom DeFanti, Jason Leigh, Luc Renambot, Andrew Johnson, "High Resolution Display of USArray Data on a 50 Megapixel Display using OptIPuter Technologies" (poster), EOS Transactions, American GeoPhysical Union (AGU), Fall meeting 2004, San Francisco CA, December 13-17, 2004.

Robert L. Grossman, Dave Hanley, Xinwei Hong and Babu Krishnaswamy, "Using DataSpace to Support Long-Term Stewardship of Remote and Distributed Data," NASA/IEEE MSST 2004, 12th NASA Goddard/21st IEEE Conference on Mass Storage Systems and Technologies, 2004.

Robert Grossman, Donald Hamelberg, Pavan Kasturi, and Bing Liu, "An Empirical Study of the Universal Chemical Key Algorithm for Assigning Unique Keys to Chemical Compounds," Journal of Bioinformatics and Computational Biology, 2004, to appear.

D. Kilb (and other E/O Contributors), "Column Spotlight on Education and Public Outreach (EPO)," MARGINS Newsletter No. 13, Fall 2004, p. 11.

D. Kilb, I. Cooper, R. de Groot, W. Schindle, R. Mellors, M. Benthien, "Using 3D Interactive Visualizations in Teacher Workshops," American Geophysical Union (AGU), 2004.

Seyoung Kim, Padhraic Smyth and Stefan Luther, "Modeling waveform shapes with random effects segmental hidden Markov models," Proceedings of the 20th International Conference on Uncertainty in Artificial Intelligence, Morgan Kaufmann, 2004.

Sergey Kirshner, Padhraic Smyth and Andrew Robertson, "Conditional Chow-Liu tree structures for modeling discrete-valued vector time series," Proceedings of the 20th International Conference on Uncertainty in Artificial Intelligence, Morgan Kaufmann, 2004.

J. Mambretti, "Intelligent Lightpaths: Data Intensive Applications and Dynamic Waveswitching Networks" (chapter), Annual Review of Communications, International Engineering Consortium, Vol. 57, 2004, pp. 719-723.

J. Mambretti, "Intelligent Lightpaths: Data Intensive Applications and Dynamic Waveswitching Networks," Annual Review of Communications, Vol. 57, International Engineering Consortium, 2004, (accepted)

T. Moher, S. Hussain, T. Halter, E. Poliakon, "Practicing Seismology in the Fifth-grade Classroom: Technology in the Service of Developing a Community of Learners," ISTA Spectrum, Vol. 40, No. 2, Fall 2004, pp. 32-38.

C. Reif, T. Ireland, J. Hammond, V. Lekic, "Characterizing Deep (> 500 km) Earthquake Regions to Investigate the Fate of Subducting Slabs," EOS Transactions, AGU Fall Meeting, Vol. 85, Supplement, Abstract, U41A-0712, 2004.

Andrew Robertson, Sergey Kirshner and Padhraic Smyth, "Hidden Markov models for modeling daily rainfall occurrence over Brazil ," Journal of Climate, 2004 (accepted for publication)

Yunhong Gu, Xinwei Hong, Robert Grossman, "Experiences in Design and Implementation of a High Performance Transport Protocol," SC 04, Pittsburgh, PA, November 2004, CD ROM.

Xin Liu, Andrew A. Chien, "Realistic Large Scale Online Network Simulation," Proceedings of the ACM Conference on High Performance Computing and Networking, SC 2004, Pittsburgh, PA, November 2004, CD ROM.

C. Nishimura, C.L. Johnson, K.D. Schwehr, D. Kilb, A. Nayak, "Visualization Tools Facilitate Geological Investigations of Mars Exploration Rover (MER) Landing Sites," IEEE Visualization, 2004, October 10-15, 2004, p. 19.

Nicholas Schwarz, Shalini Venkataraman, Luc Renambot, Naveen Krishnaprasad, Venkatram Vishwanath, Jason Leigh, Andrew Johnson, Graham Kent, Atul Nayak, "Vol-a-Tile: A Tool for Interactive Exploration of Large Volumetric Data on Scalable Tiled Displays" (poster), IEEE Visualization 2004 Poster Compendium, October 10-15, 2004, CD ROM

Luc Renambot, Arun Rao, Rajvikram Singh, Byungil Jeong, Naveen Krishnaprasad, Venkatram Vishwanath, Vaidya Chandrasekhar, Nicholas Schwarz, Allan Spale, Charles Zhang, Gideon Goldman, Jason Leigh, Andrew Johnson, Andrew, "SAGE: the Scalable Adaptive Graphics Environment ," Fourth Annual Workshop on Advanced Collaborative Environments (WACE 2004), Nice, France, September 23, 2004.

Naveen K. Krishnaprasad, Venkatram Vishwanath, Shalini Venkataraman, Arun G. Rao, Luc Renambot, Jason Leigh, Andrew E. Johnson "JuxtaView: A Tool for Interactive Visualization of Large Imagery on Scalable Tiled Displays," IEEE Cluster Computing 2004, Sept. 20-23 2004, San Diego, CA, pp. 411-420.

Rajvikram Singh, Byungil Jeong, Luc Renambot, Andrew Johnson, Jason Leigh "TeraVision: a Distributed, Scalable, High Resolution Graphics Streaming System", 6th IEEE International Conference on Cluster Computing, Sept. 20-23 2004, San Diego, California, pp. 391- 400. 

J. Mambretti, "Experimental Optical Grid Networks: Integrating High Performance Infrastructure and Advanced Photonic Technology with Distributed Control Planes," Proceedings, ECOC Workshop on Optical Networks for Grids, Stockholm, Sweden, September 5, 2004.

Hal S. Stern, David van Dyk, Padhraic Smyth and Seyoung Kim, "A variance components analysis of a multi-site fMRI study," Joint Statistics Meeting of the American Statistical Association, August 2004.

Yasuhiro Kirihata, Jason Leigh, Chaoyue Xiong and Tadao Murata, "A Sort-Last Rendering System over an Optical Backplane," International Conference on Cybernetics and Information Technologies, Systems and Applications: (CITSA), July 2004.

Huaxia Xia, Holly Dail, Henri Casanova and Andrew Chien, "The MicroGrid: Using Emulation to Predict Application Performance in Diverse Grid Network Environments ," IEEE Second International Workshop on Challenges of Large Applications in Distributed Environments (CLADE’04), held in conjunction with the 13th International Symposium on High Performance Distributed Computing (HPDC-13), at the Hilton Hawaiian Village Beach Resort, Honolulu, Hawaii, June 4, 2004, pp. 52-63.

B. St. Arnaud, A.D. Chave, A. Maffei, E. Laszowka, L. Smarr, G. Gopalan, "An Integrated Approach to Ocean Observatory Data Acquisition/Management and Infrastructure Control using Web Services," Marine Technology Society (MTS) Journal, Volume 38, Number 2, Summer 2004.

C. Xiong, T. Murata, J. Leigh, "An Approach for Verifying Routing Protocols in Mobile Ad Hoc Networks Using Petri Nets," IEEE 6th CAS symposium on emerging technologies: Frontiers of mobile and wireless communication,” Shanghai, China, May 31-June 2, 2004.

Suzana Camargo, Andrew Robertson, Scott Gaffney and Padhraic Smyth, "Cluster analysis of Western North Pacific tropical cyclone tracks," Proceedings of the 26th Conference on Hurricanes and Tropical Meteorology, 10A.7, May 3-7, 2004, Miami, FL, pp. 250-251.

G. M. Kent, J. Orcutt, L. Smarr, J. Leigh, A. Nayak, D. Kilb, L. Renambot, S. Venkataraman, T. DeFanti, Y. Fialko, P. Papadopoulos, G. Hidley, D. Hutches, M. Brown, "The OptIPuter: a new approach to volume visualization of large seismic datasets," Ocean Technology Conference, May 2004.

Chetan Gupta and Robert L. Grossman, "GenIc: A Single Pass Generalized Incremental Algorithm for Clustering," SIAM International Conference on Data Mining (SDM 04), Florida, April 22-24, 2004.

A.M. Nayak, D. Kilb, R. Newman, G. Kent, F.L. Vernon and J. Orcutt, "The Potential Role of the OptIPuter in the Earthscope Project," Seismological Society of America 2004 Annual Meeting, Palm Springs, April 14-16 2004.

N. Taesombut and A. Chien, "Distributed Virtual Computer (DVC): Simplifying the Development of High Performance Grid Applications," Proceedings of the Workshop on Grids and Advanced Networks (GAN ’04), Chicago, Illinois, held in conjunction with the IEEE Cluster Computing and the Grid (CCGrid2004) Conference, April 2004. 

Ryan Wu and Andrew Chien, "GTP: Group Transport Protocol for Lambda-Grids," Proceedings of the 4th IEEE/ACM International Symposium on Cluster Computing and the Grid (CCGrid2004), Chicago, Illinois, April 2004.  

D. Kondo, M. Taufer, C. Brooks, H. Casanova, and A. Chien, "Characterizing and Evaluating Desktop Grids: An Empirical Study," Proceedings of International Parallel and Distributed Processing Symposium (IPDPS 2004), Santa Fe, New Mexico, April 2004.

Alex Olugbile, Huaxia Xia, Xin Liu, Andrew Chien, et. al., "New Grid Scheduling and Rescheduling Methods in the GrADS Project," Workshop for Next Generation Software, held in conjunction with the IEEE International Parallel and Distributed Processing Symposium 2004 (IPDPS 2004), Santa Fe, New Mexico, April 2004.

M. Taufer, M. Crowley, D. Price, A. Chien, C. L. Brooks III, "Study of an Accurate and Fast Protein-Ligand Docking Algorithm based on Molecular Dynamics ," Proceedings of the Third IEEE International Workshop on High Performance Computational Biology (HiCOMB 2004), held in conjunction with IPDPS 2004, Santa Fe, New Mexico, April 2004.

M. Taufer, P. Cicotti, and A. Chien, "DGMonitor: a Performance Monitoring Tool for Sand-box based Desktop Grid Platforms ," Proceedings of the Third International Workshop on Performance Modeling, Evaluation, and Optimization of Parallel and Distributed Systems (PMEO-PDS 2004), Santa Fe, New Mexico, April 2004.

J.L. Hardebeck, J. Boatwright, D. Dreger, R. Goel, V. Graizer, K. Hudnut, C. Ji, L. Jones, J. Langbein, J. Lin, E. Roelofffs, R. Simpson, K. Stark, R. Stein and J.C. Tinsley, "Preliminary Report on the 22 December 2003, M 6.5 San Simeon, California, Earthquake," Seismological Research Letters (SRL), 75, March/April 2004, pp. 155-172.

A. Falk, T. Faber, E. Coe, A. Kapoor, R. Braden, "Experimental Measurements of the eXplicit Control Protocol," Second Annual Workshop on Protocols for Fast, Long-Distance Networks (PFLDnet 2004), Argonne, IL, February 16-17, 2004.

Ryan Wu and Andrew Chien, "Evaluation of Rate Based Transport Protocols for Lambda-Grids" (extended abstract), Second International Workshop on Protocols for Fast Long-Distance Networks (PFLDnet 2004), Argonne, Illinois, Feb 2004. 

Larry Smarr, "The Use of e-Science Grids to Support ORION," International Science Planning Workshop on the Dynamics of Earth and Ocean Systems (DEOS): Ocean Research Interactive Observatory Networks (ORION), sponsored by the National Science Foundation (NSF) and the Natural Science and Engineering Research Council (Canada), January 4-8, 2004, Puerto Rico.

Amitabha Bagchi, Amitabh Chaudhary, Michael Goodrich, and Shouhuai Xu, “Constructing Disjoint Paths for Secure Communication,” 17th Int. Symp. on Distributed Computing (DISC), LNCS 2848, Springer-Verlag, 2003, pp. 181-195.

Michael Goodrich, Roberto Tamassia, and William H. Winsborough, "Authenticated Dictionaries for Fresh Attribute Credentials," 1st Int. Conference on Trust Management (iTrust), LNCS 2692, Springer-Verlag, 2003, pp. 332-347.

Michael Goodrich, Roberto Tamassia, Nikos Triandopoulos, and Robert Cohen, "Authenticated Data Structures for Graph and Geometric Searching," Proc. RSA Conference -- Cryptographers” Track (CT-RSA), LNCS 2612, Springer-Verlag, 2003, 295-313.

Robert L. Grossman, "Standards, Services and Platforms for Data Mining: A Quick Overview," Proceedings of the KDD 03 DM-SSP Workshop, 2003.

J. Leigh, P. Morin, A. Johnson, T.A. DeFanti, M. Brown, D. Sandin, F. Rack, F. Vernon, J. Orcutt, B. Davis, P. van Keken, L. Smarr, "GeoWall2: A Scalable Display System for the Geosciences," American Geophysical Union Fall Meeting, December 2003.

K. Lindquist, R. Newman, A. Nayak, F. Vernon, N. Cooper, "Dynamic Web Expression for Near-real-time Sensor Networks," EOS Trans. AGU, 84(46), Fall Meet. Suppl., Abstract ED32C-1205, December 2003.

A.M. Nayak, K. Lindquist, D. Kilb, R. Newman, F. Vernon, "Using 3D Glyph Visualization to Explore Real-time Seismic Data on Immersive and High-resolution Display Systems," EOS Trans. AGU, 84(46), Fall Meet. Suppl., Abstract ED32C-1208, December, 2003.

R.L. Newman, D. Kilb, A. Nayak, G. Kent, "The Role of Research Institutions in Building Visual Content for the GeoWall," EOS Trans. AGU, 84(46), Fall Meet. Suppl., Abstract ED31E-06, December 2003.

Maxine Brown (guest editor), "Introduction: Blueprint for the Future of High-Performance Networking," Communications of the ACM, Volume 46, Issue 11, November 2003, pp. 30-33. 

Tom DeFanti, Cees de Laat, Joe Mambretti, Kees Neggers, and Bill St. Arnaud, "TransLight: A Global-Scale LambdaGrid for e-Science," Communications of the ACM, Volume 46, Issue 11, November 2003, pp. 34-41.

Larry L. Smarr, Andrew A. Chien, Tom DeFanti, Jason Leigh, Philip M. Papadopoulos, "The OptIPuter," Communications of the ACM, Volume 46, Issue 11, November 2003, pp. 58-67.

Aaron Falk, Ted Faber, Joseph Bannister, Andrew Chien, Robert Grossman, Jason Leigh, "Transport Protocols for High Performance," Communications of the ACM, Volume 46, Issue 11, November 2003, pp. 42-49.

Ian Foster, Robert L. Grossman, "Data Integration in a Bandwidth-Rich World," Communications of the ACM, Volume 46,Issue 11, November 2003, pp. 50-57.

Harvey B. Newman, Mark H. Ellisman, John A. Orcutt, "Data-intensive E-Science Frontier Research," Communications of the ACM, Volume 46,Issue 11, November 2003, pp. 68-77.

Xin Liu and Andrew Chien, "Traffic-based Load Balance for Scalable Network Emulation," SC 2003, Phoenix, Arizona, November 2003.

Xin Liu, Huaxia Xia, and Andrew A. Chien, "Network Emulation Tools for Modeling Grid Behavior," 3rd IEEE/ACM International Symposium on Cluster Computing and the Grid (CCGrid 2003), May 12-15, 2003 in Tokyo, Japan.

R.L. Grossman, Y. Gu, D. Hanley, X. Hong, and G. Rao, "Open DMIX -- Data Integration and Exploration Services for Data Grids, Data Web and Knowledge Grid Applications," Proceedings of the IEEE Workshop on Knowledge Grid and Grid Intelligence (KGGI 03), Halifax, Canada, October 13, 2003.

D. Kilb, C.S. Keen, R.L. Newman, G.M. Kent, D.T. Sandwell, F.L. Vernon, C.L. Johnson, J.A. Orcutt, "The Visualization Center at Scripps Institution of Oceanography: Education & Outreach," Seis. Res. Lett., 2003, in press. 

D. Chudova, S. Gaffney, E. Mjolsness and P. Smyth, "Translation-invariant mixture models for curve-clustering," Proceedings of the Ninth ACM International Conference on Knowledge Discovery and Data Mining (SIGKDD), Washington DC, August 2003.

Robert Grossman, Donald Hamelberg, Pavan Kasturi, and Bing Liu, "Experimental Studies of the Universal Chemical Key (UCK) Algorithm on the NCI Database of Chemical Compounds," Proceedings of the IEEE Computer Society Bioinformatics Conference, CSB 2003, pp. 244-250.

D. Chudova, S. Gaffney and P. Smyth, "Probabilistic models for joint clustering and time-warping of multidimensional curves," Proceedings of the 19th Conference on Uncertainty in Artificial Intelligence, Acapulco, Mexico, August 2003; Morgan Kaufmann, San Francisco, CA.

Cees de Laat, Maxine Brown and Tom DeFanti, (guest editors), Journal of Future Generation Computer Systems (FGCS), Elsevier Science Press, Volume 19, Issue 6, August 2003.

Rajvikram Singh, Jason Leigh, Thomas A. DeFanti, Fotis Karayannis, "TeraVision: A High Resolution Graphics Streaming Device for Amplified Collaboration Environments," Journal of Future Generation Computer Systems (FGCS), Elsevier Science Press, Volume 19, Issue 6, August 2003, pp. 957-972.

Eric He, Javid Alimohideen, Josh Eliason, Naveen K. Krishnaprasad, Jason Leigh, Oliver Yu, Thomas A. DeFanti, "Quanta: A Toolkit for High Performance Data Delivery over Photonic Networks," Journal of Future Generation Computer Systems (FGCS), Elsevier Science Press, Volume 19, Issue 6, August 2003, pp. 919-934.

Shalini Venkataraman, Jason Leigh, Tom Coffin, "Kites Flying In and Out of Space - Distributed Physically-based Art on the GRID," Journal of Future Generation Computer Systems (FGCS), Elsevier Science Press, Volume 19, Issue 6, August 2003, pp. 973-982.

Chong (Charles) Zhang, Jason Leigh, Thomas A. DeFanti, Marco Mazzucco, Robert Grossman, "TeraScope: Distributed Visual Data Mining of Terascale Data Sets over Photonic Networks," Journal of Future Generation Computer Systems (FGCS), Elsevier Science Press, Volume 19, Issue 6, August 2003, pp. 935-944.

Robert L. Grossman, Yunhong Gu, Dave Hanley, Xinwei Hong, Dave Lillethun, Jorge Levera, Joe Mambretti, Marco Mazzucco, and Jeremy Weinberger, "Experimental Studies Using Photonic Data Services at IGrid 2002," Journal of Future Generation Computer Systems (FGCS), Elsevier Science Press, Volume 19, Issue 6, August 2003, 945-956.

J. Mambretti, J. Weinberger, J. Chen, E. Bacon, F. Yeh, D. Lillethun, R. Grossman, Y. Gu, M. Mazzuco, "The Photonic TeraStream: Enabling Next Generation Applications Through Intelligent Optical Networking at iGrid 2002," Journal of Future Generation Computer Systems (FGCS), Elsevier Science Press, Volume 19, Issue 6, August 2003, 897-908.

Tom DeFanti, Maxine Brown, Jason Leigh, Oliver Yu, Eric He, J. Mambretti, D. Lillethun and J. Weinberger, "Optical Switching Middleware for the OptIPuter," Institute of Electronics, Information and Communication Engineers (IEICE) Transactions on Communications (special issue on Photonic IP Network Technologies for Next Generation Broadband Access), Japan, Volume E86-B, No. 8, August 2003, pp. 2263-2272. 

Jason Leigh, Luc Renambot, Thomas A. DeFanti, Maxine Brown, Eric He, Naveen Krishnaprasad, Javid M Alimohideen Meerasa, Atul Nayak, Kyoung Park, Rajvikram Singh, Shalini Venkataraman, Chong (Charles) Zhang, Drake Livingston, Michael McLaughlin, "An Experimental OptIPuter Architecture for Data-Intensive Collaboration Visualization," Third Annual Workshop on Advanced Collaborative Environments, co-located at the Twelfth IEEE International Symposium on High Performance Distributed Computing (HPDC 12) and Global Grid Forum 8, Seattle, Washington, June 22, 2003.

Kyoung Park, Luc Renambot, Jason Leigh, Andrew Johnson, "The Impact of Display-rich Environments for Enhancing Task Parallelism and Group Awareness in Advanced Collaboration Environments," Third Annual Workshop on Advanced Collaborative Environments, co-located at the Twelfth IEEE International Symposium on High Performance Distributed Computing (HPDC 12) and Global Grid Forum 8, Seattle, Washington, June 22, 2003.

David Lee, Enhancing Electron and Light Microscopy Functionality with the IBM T221 Monitor: Current Applications and Future Directions, IBM T221-NCMIR White Paper, 03-ILS-090, V1.0, May 9, 2003.

M.T. Goodrich, M. Shin, R. Tamassia and W.H. Winsborough, "Authenticated Dictionaries for Fresh Attribute Credentials," 1st Int. Conference on Trust Management (iTrust), LNCS 2692, Springer-Verlag, 2003, pp. 332-347.

M.T. Goodrich, R. Tamassia, N. Triandopoulos and R. Cohen, "Authenticated Data Structures for Graph and Geometric Searching," Proc. RSA Conference Cryptographers' Track (CT-RSA), LNCS 2612, Springer-Verlag, 2003, pp. 295-313.

T. Moher, X. Ding, J. Wiley, D. Conmy, S. Hussain, P. Singh and V.l Srinivasan, "Combining Handhelds with a Whole-Class Display to Support the Learning of Scientific Control," ACM Conference on Human Factors in Computing Systems Extended Abstracts, Ft. Lauderdale, FL, April 2003, pp. 882-883.

Xin Liu, Huaxia Xia, and Andrew Chien, “Validating and Scaling the MicroGrid: A Scientific Instrument for Grid Dynamics,” Journal of Grid Computing, Volume II, Number 2, pages 141-161.

Thomas A. DeFanti, Jason Leigh, Maxine D. Brown, Daniel J. Sandin, Oliver Yu, Chong Zhang, Rajvikram Singh, Eric He, Javid Alimohideen, Naveen K. Krishnaprasad, Robert Grossman, Marco Mazzucco, Larry Smarr, Mark Ellisman, Phil Papadopoulos, Andrew Chien, John Orcutt, "Teleimmersion and Visualization with the OptIPuter," Proceedings of the 12th International Conference on Artificial Reality and Telexistence (ICAT 2002), The University of Tokyo, Japan, December 3-6, 2002.

J. Leigh, A. Johnson, K. Park, A. Nayak, R. Singh, V. Chowdhry, "Amplified Collaboration Environments," VizGrid Symposium, Tokyo, November 2002  Marco Mazzucco, Asvin Ananthanarayan, Robert L. Grossman, Jorge Levera, and Gokulnath Bhagavantha Rao, Merging Multiple Data Streams on Common Keys over High Performance Networks, Proceedings of Supercomputing 02. 

BOOKS, THESES AND REPORTS

Leigh, J. A. Johnson, L. Renambot, "Advances in Computer Displays"" (chapter), Advances in Computers, Vol. 77, Elsevier/Morgan Kaufman, July 13, 2009.

Jeong, Byungil, Visualcasting: Scalable Real-time Image Distribution in Ultra-High Resolution Display Environments, PhD Dissertation, Computer Science, University of Illinois at Chicago, 2009 

Vishwanath, Venkat, LambdaRAM: A high-performance, multi-dimensional, distributed cache for data-intensive applications over high-speed networks, PhD Dissertation, Computer Science, University of Illinois at Chicago, 2009

Robert L. Kooima, Planetary-scale Terrain Composition, PhD Dissertation, Computer Science, University of Illinois at Chicago, October 2008

Dmitri N. Svistula, Rain Table: Scalable Architecture for Group-Oriented Visualization of Real-Time Geoscience Phenomena, MS Thesis, Computer Science, University of Illinois at Chicago, IL, May 2008

Charles Zhang, OptiStore: An On-Demand Data Processing Middleware for Very Large Scale Interactive Visualization, PhD Dissertation, Computer Science, University of Illinois at Chicago, May 2008

Xingfu Wu and Valerie Taylor, "Performance Analysis of Parallel Visualization Applications and Scientific Applications on an Optical Grid," TAMU Technical Report ,April 2008

Nicholas Schwarz, Distributed Volume Rendering of Very Large Data on High-Resolution Scalable Displays, Master's Thesis, Computer Science, University of Illinois at Chicago, Chicago, IL, October 2007.

Nut Taesombut, Coordinated Resource Management for Guaranteed High Performance and Efficient Utilization in Lambda-Grids, PhD Dissertation, University of California at San Diego, Fall 2007.

E. Weigle, The Composite Endpoint Protocol (CEP): High Performance Partial Content Distribution, PhD Dissertation, University of California at San Diego, July 2007.

Jinghua Ge, A Point-Based Remote Visualization Pipeline For Large-Scale Virtual Reality, PhD Thesis, Computer Science, University of Illinois at Chicago, May 2007

X. Wu, Distributed Fair Bandwidth Sharing for Lambda Networks, PhD Dissertation, University of California at San Diego, March 2007.

Javid Alimohideen,Design and Implementation of SAGE Display Controller, MS Thesis, Computer Science, University of Illinois at Chicago, February 2007

Eric He, A Flexible Advance Reservation Model for Multi-Domain WDM Optical Networks, PhD Thesis, Computer Science, University of Illinois at Chicago, September 2006

Tom DeFanti, Laurin Herr and Natalie Van Osdol, "CineGrid, A Grid for Digital Cinema" (chapter), Grid Networks: Enabling Grids with Advanced Communication Technology , (Franco Travostino, Joe Mambretti, Gigi Karmous-Edwards, editors), John Wiley & Sons, July 2006, pp. 33-36.

Robert Grossman, "Data Mining" (chapter), Grid Networks: Enabling Grids with Advanced Communication Technology , (Franco Travostino, Joe Mambretti, Gigi Karmous-Edwards, editors), John Wiley & Sons, July 2006, pp. 30-32.

Jason Leigh, Eric He, Robert Grossman, "Grid Networks and UDP Services, Protocols, and Technologies" (chapter), Grid Networks: Enabling Grids with Advanced Communication Technology , (Franco Travostino, Joe Mambretti, Gigi Karmous-Edwards, editors), John Wiley & Sons, July 2006, pp. 171-184.

Jason Leigh, Luc Renambot, Maxine Brown, "Grid Network Requirements for Large Scale Visualization and Collaboration" (chapter), Grid Networks: Enabling Grids with Advanced Communication Technology , (Franco Travostino, Joe Mambretti, Gigi Karmous-Edwards, editors), John Wiley & Sons, published July 2006, pp. 18-23.

Joe Mambretti, "Grid Network Services Building on Multi-Service Networks" (chapter), Grid Networks: Enabling Grids with Advanced Communication Technology , (Franco Travostino, Joe Mambretti, Gigi Karmous-Edwards, editors), John Wiley & Sons, July 2006, pp. 99-112.

Joe Mambretti, "OptIPuter" (appendix), Grid Networks: Enabling Grids with Advanced Communication Technology, (Franco Travostino, Joe Mambretti, Gigi Karmous-Edwards, editors), John Wiley & Sons, July 2006, pp. 315.

Joe Mambretti, Bill St. Arnaud, Tom DeFanti, Maxine Brown, Kees Neggers, "Grid Network Services and Implications for Network Service Design" (chapter), Grid Networks: Enabling Grids with Advanced Communication Technology , (Franco Travostino, Joe Mambretti, Gigi Karmous-Edwards, editors), John Wiley & Sons, July 2006, pp. 81-98.

Larry Smarr, "Foreword," Grid Networks: Enabling Grids with Advanced Communication Technology , (Franco Travostino, Joe Mambretti, Gigi Karmous-Edwards, editors), John Wiley & Sons, July 2006, pp. xxv – xxvi.

J. Touch, Y-H. Yan, "Reducing the Impact of DoS Attacks on Endpoint Security," (submitted to NPsec at ICNP 2005, to be issued as a tech. report pending reviewer decision -- draft available after reviewer decision, notification due end July 2006).

Franco Travostino, Joe Mambretti, Gigi Karmous-Edwards, (editors), Grid Networks: Enabling Grids with Advanced Communication Technology, John Wiley & Sons, July 2006

J. Touch, A. Mankin, "The TCP Simple Authentication Option ," Internet Draft, June 9, 2006.

J. Touch., "Defending TCP Against Spoofing Attacks ," Internet Draft, May 15, 2006. (February 18, 2006 and October 8, 2005 versions also issued.)

J. Touch, "A TCP Option for Port Names," Internet Draft, April 14, 2006.

J. Touch, D. Black, Y. Wang, "Problem and Applicability Statement for Better Than Nothing Security (BTNS)," Internet Draft, February 17, 2006. (September 23, 2005 version also issued.)

NITRD Supplement to the President's Budget for Fiscal Year 2007, published by the US National Coordination Office for Networking and Information Technology Research and Development (NCO/NITRD), February 2006, pp. 12, 29.

D.J. Cox, "Visualization and Visual Metaphors" (chapter), Aesthetic Computing , (Paul Fishwick, editor), MIT Press, 2006, pp. 14-89

Brian N. Davis and Brian G. Maddox, "Blending Technologies: Remote Sensing, GPS and Visualization - Real-time Visualization Techniques," Manual of Geographic Information Systems (Marguerite Madden, Center for Remote Sensing and Mapping Science, Department of Geography, University of Georgia, Editor-in-Chief) published by the American Society of Photogrammetry and Remote Sensing, to be published 2006

Joe Mambretti, "Infrastructure as Platform: Services-Oriented Architecture, Visualization, and 21st Century Communications" (chapter), Annual Review of Communications, International Engineering Consortium, Vol. 59, to be published 2006

Joe Mambretti, "The Digital Communications Grid: Creating A New Architectural Foundation for 21st Century Digital Communications Based on Intelligent Lightpaths" (chapter), Annual Review of Communications, International Engineering Consortium, Vol. 58, 2005, pp. 307-314.

S. Gaffney and P. Smyth, "Joint Probabilistic Curve-Clustering and Alignment " (chapter), Advances in Neural Information Processing Systems (NIPS), 2005, in press.

Robert L. Grossman, "Alert Management Systems -- A Quick Introduction" (chapter), Managing Cyber Threats: Issues, Approaches and Challenges, Vipin Kumar, Jaideep Srivastava, Aleksandar Lazarevic (editors), Kluwer Academic Publisher, 2005, pp. 281-294.

Joe Mambretti and Richard des Jardins, Report of Optical Network Testbeds Workshop 2 (ONT2) , hosted by the NASA Research & Education Network (NREN), sponsored by National Coordination Office for Networking and Information Technology Research and Development (NITRD) Large Scale Networking (LSN) Coordinating Group, NASA Ames, CA, October, 2005.

Joe Touch, "Variable Effort, Variable Certainly Triage for IPsec," 63rd IETF Meeting, Paris, France, July 31-August 5, 2005 (to be presented).

Xinran (Ryan) Wu, Andrew A. Chien, "A Distributed Algorithm for Max-min Fair Rate Allocation ", UCSD Technical Report, July 2005.

Chaoyue Xiong, LambdaStream Networking, MS thesis, Electronic Visualization Laboratory and the Computer Science Department, University of Illinois at Chicago, May 2005.

Joe Touch, "Defending TCP Against Spoofing Attacks," IETF TCP Modifications (TCPM) Working Group, The Internet Society, April 2005.

Robert L. Grossman, Y. Gu, D. Hanley, X. Hong, D. Lillethun, J. Levera, J. Mambretti, M. Mazzucco, J. Weinberger, H. Kargupta, "Photonic Data Services: Integrating Path, Network and Data Services to Support Next Generation Data Mining Applications" (chapter 5), Data Mining: Next Generation Challenges and Future Directions, Advances in Knowledge Discovery, A. Joshi, K. Sivakumar and Y. Yesha (editors) AAAI Press, 2004.

D.J. Cox, "Visualization in the Life Sciences" (chapter), Databasing the Brain: Data to Knowledge (Neuroinformatics) , Shankar Subramaniam and Stephen Koslow (editors), John Wiley Press: New York, November, 2004, pp. 123-152.

Xin Liu, Scalable Online Simulation for Modeling Grid Dynamics, UCSD Computer Science PhD Thesis, November 2004.

Andrew A. Chien, Xinran (Ryan) Wu, Nut Taesombut, Eric Weigle, Huaxia Xia, and Justin Burke, "OptIPuter System Software Framework," Technical Report CS2004-0786, Concurrent Systems Architecture Group, UCSD, April 12, 2004.

Yasuhiro Kirihata, An Implementation of Sort-Last Volume Rendering over an Optical Network Backplane , MS Thesis Project report, Electronic Visualization Laboratory, University of Illinois at Chicago, April 2004.

Shalini Venkataraman, Vol-a-Tile Benchmarks , MS Thesis Project report, Electronic Visualization Laboratory, University of Illinois at Chicago, April 2004.

Eric Weigle, "A Performance Analysis of the BigBangwidth Lightpath Accelerator," Technical Report, Concurrent Systems Architecture Group, UCSD, March 2004.

Yunhong Gu and Robert L. Grossman, "UDT: A Transport Protocol for Data Intensive Applications," IETF Draft.

Thomas A. DeFanti, Jason Leigh, Maxine D. Brown, Daniel J. Sandin, Oliver Yu, Chong Zhang, Rajvikram Singh, Eric He, Javid Alimohideen, Naveen K. Krishnaprasad, Robert Grossman, Marco Mazzucco, Larry Smarr, Mark Ellisman, Phil Papadopoulos, Andrew Chien, John Orcutt, "Teleimmersion and Visualization with the OptIPuter," Telecommunication, Teleimmersion and Telexistence, (Susumu Tachi, editor), Ohmsha/IOS Press, 2003, pp. 25-71.

NSF REPORTS

OptIPuter FY2009 Final Progress Report, October 2009

OptIPuter FY2008 Annual Progress Report and FY2009 Program Plan (PPP) , January 2009

OptIPuter FY2007 Annual Progress Report and FY2008 Program Plan (PPP) , February 2008

OptIPuter FY2006 Annual Progress Report and FY2007 Program Plan (PPP), July 2006

OptIPuter FY2005 Annual Progress Report and FY2005 Program Plan (PPP),
August 2005

OptIPuter Response to Year 2 NSF Project Review, February 2005

OptIPuter FY2004 Annual Progress Report and FY2005 Program Plan (PPP), June 2004 

OptIPuter FY2004 Revised Program Plan, May 2004

OptIPuter Response to Year 1 NSF Project Review, December 2003

OptIPuter FY2003 Annual Progress Report and FY2004 Program Plan, September 2003